PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1096
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 465aa    MW: 50800.3 Da    PI: 10.3047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1096genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-056284123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Gh_D04G1096 62 FICEICNKGFQRDQNLQLHRRGH 84
                 89*******************88 PP

2zf-C2H212.90.00034139161123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Gh_D04G1096 139 WKCEKCSKKYAVQSDWKAHSKTC 161
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-76184No hitNo description
Gene3DG3DSA:3.30.160.601.2E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8456284IPR007087Zinc finger, C2H2
PfamPF121715.5E-56284IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355100104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-7134159No hitNo description
SMARTSM00355140139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSGDGFSLPV SIGGFVHQEQ NNTNPNPKSN PVKKKRNLPG NPDPDAEVIA LSPKTLMATN  60
RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRNNKEPVK KKVYICPEKT CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF  180
ITHRAFCDAL AEESARFSSV AGAATNLNFR NDVVNLPIGF GGIPQFGSGF TQDVSGMTVS  240
GLPEMVQIAS GNLFRSSSLN KFGTDSNPPL LQLPQGLKEE GGSKGKLMES LSPLYSDTQN  300
EQSKPAAPMS ATALLQKAAQ MGSTRSKPTS FFGNSFGVMS STSSQRSASL RSTQNRNGQL  360
QQIYPNVKQQ ESNLMASSSV SMSANAGLGT SNNFDRLILQ TGVKQNAPNQ LKMHPGSNSI  420
DQSLTRDFLG MGNDQSARPF LPQELAKFAS IGSTMGLNQF SSSNH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443323.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D21e-147IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A0D2V1730.0A0A0D2V173_G
STRINGPOPTR_0006s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-126C2H2-like zinc finger protein